Pyhealth.readthedocs.io

pyhealth.data.Patient

WEBA Patient is a collection of Visit for the current patients. It contains all necessary attributes of a patient, such as ethnicity, mortality status, gender, etc. It can support various …

Actived: 7 days ago

URL: https://pyhealth.readthedocs.io/en/latest/api/data/pyhealth.data.Patient.html

pyhealth.metrics.multilabel

WEBComputes metrics for multilabel classification. User can specify which metrics to compute by passing a list of metric names. The accepted metric names are: cwECE: classwise …

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Advanced Tutorials

WEBWe provided advanced tutorials for supporting various needs. Advanced Tutorial 1: Fit your dataset into our pipeline [Video] Advanced Tutorial 2: Define your own healthcare task. …

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Frequently Asked Questions

WEBThe long term goal of PyHealth is to become a comprehensive healthcare AI toolkit that supports beyond EHR data, but also the images and clinical notes. This is the central …

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pyhealth.tasks.drug_recommendation

WEBDrug recommendation aims at recommending a set of drugs given the patient health history (e.g., conditions and procedures). Parameters: patient ( Patient) – a Patient object. …

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pyhealth.models.Transformer

WEBclass pyhealth.models.Transformer(dataset, feature_keys, label_key, mode, pretrained_emb=None, embedding_dim=128, **kwargs) [source] #. Bases: BaseModel. …

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pyhealth.datasets.mimic4

WEBclass MIMIC4Dataset (BaseEHRDataset): """Base dataset for MIMIC-IV dataset. The MIMIC-IV dataset is a large dataset of de-identified health records of ICU patients

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pyhealth.datasets.TUEVDataset

WEBDataset is available at https://isip.piconepress.com/projects/tuh_eeg/html/downloads.shtml This corpus is a subset of TUEG that contains annotations of EEG segments

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pyhealth.datasets.sample_dataset

WEBclass SampleBaseDataset (Dataset): """Sample base dataset class. This class the takes a list of samples as input (either from `BaseDataset.set_task()` or user-provided input), …

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pyhealth.metrics.multiclass

WEBpyhealth.metrics.multiclass# pyhealth.metrics.multiclass. multiclass_metrics_fn (y_true, y_prob, metrics = None, y_predset = None) [source] # Computes metrics for multiclass …

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pyhealth.metrics.binary

WEBpyhealth.metrics.binary# pyhealth.metrics.binary. binary_metrics_fn (y_true, y_prob, metrics = None, threshold = 0.5) [source] # Computes metrics for binary classification. User can …

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